Coronaviridae
(Under Construction)
Table of Contents
- Coronaviridae Family
- Properties of Coronaviruses
- Virus Replication
- Taxonomy
- Original Source and History of Virus
- Virion Properties
- Morphology
- Physicochemical and Physical Properties
- Nucleic Acid
- Proteins
- Lipids
- Carbohydrates
- Genome Organization and Replication
- Infectivity
- Replication
- Function of Helper and Satellite Viruses
- Cytopathology
- Antigenic Properties
- Serological Relationships
- Diagnosis
- Biological Properties
- Symptoms and Host Range
- Transmission
- Geographic Distribution
- Ecology and Control
- Diagnostic and Methods
- Taxonomic Structure
- General Comments
- References
-
Coronaviridae Family
The Coronaviridae family consists of two genera -
coronavirus and torovirus - and a possible third, arterivirus. The toroviruses infect
humans and animals and are predominantly associated with enteric disease. Toroviruses have
been associated with enteric disease of horses (Berne virus), cattle (Breda virus), pigs,
and cats. The virions have a typical pleomorphic morphology and virion organization is
characteristic of the Coronaviridae family. The coronavirus genus contains many
important pathogens of veterinary significance and is described below: the arterivirus
genus, which has tentatively, and probably only temporarily, been placed in this family.
Coronaviruses infect a wide range of mammals
(including humans) and birds. They exhibit a marked tropism for epithelial cells of the
respiratory and enteric tracts. In addition to such infections, other diseases caused by
coronaviruses include hepatitis, neurologic disease, infectious peritonitis, nephritis,
pancreatitis, runting, and adenitis. These viruses are divided into three antigenic
groups: porcine transmissible gastroenteritis virus, canine and feline coronavirus, and
feline infectious peritonitis virus constitute Group I; porcine hemagglutinating
encephalomyelitis virus, bovine coronavirus, and turkey coronavirus make up Group II; and
infectious bronchitis virus is comprised by Group III.
Coronavirus has a unique morphologic appearance
characterized by large club-shaped surface projections (peplomers) extending out of a
somewhat pleomorphic lipidcontaining envelope that encloses a coiled helical nucleocapsid
structure. Virion size ranges from 75 nm to 160 nm in diameter, and the genome consists of
a single molecule of ssRNA (positive sense).
Two viral-specified structural glycoproteins (S
and M) are found in the envelope. Glycoprotein S is largely external to the membrane
perimeter and gives rise to the typical club-shaped projections (approximately 20nm in
length) of the virion membrane. The glycoprotein contains epitopes to which neutralizing
antibodies and cell-mediated cytotoxicity are directed and is responsible for virion
binding to host cell membranes. Glycoprotein M is a transmembrane molecule and is more
deeply embedded in the envelope. Antibodies directed against M may neutralize the virus in
the presence of complement. The third major structural protein is a basic phosphoprotein
(N) that forms a long, flexible,, helical nucleocapsid enclosing the genomic RNA.
Properties of
Coronaviruses
The coronaviruses were so named
because the unusually large clubshaped peplomers projecting from the envelope give-the
particle the appearance of a solar corona. Though typically about 100 nm in diameter, the
virion is pleomorphic and can range in size from 75 to 160 nm. The helical
ribonucleoprotein, difficult to discern in electron micrographs, is composed of the
genomic RNA and the phosphorylated nucleocapsid protein N (50K-60K). The envelope includes
a lipid bilayer derived from intracellular membranes of the host cell and three types of
glycoproteins, M (E 1, 23K-29K), HE (E3, 62K-65K, absent in some coronaviruses), and S
(E2, 170K-220K). M (El) is a transmembrane protein that performs the role filled by the
matrix protein in other enveloped viruses. The large peplomers are composed of S (E2)
which binds to cellular receptors, causes membrane fusion, and induces the production of
neutralizing antibodies. HE (hernagglutinin esterase, E3), which is found particularly in
the antigenic group II coronaviruses, binds to erythrocytes of some species and has
receptor-destroying (acetylesterase) activity.
The genome consists of a
single linear molecule of plus sense ssRNA, 27-33 kb (the largest of all RNA virus
genomes), which is capped and polyadenylated. Viral RNA is infectious.
The family contains one genus, Coronavirus, which
has been divided into four antigenic groups (I [Mammalian]. II [Mammalian], III [Avian],
IV [Avian]). Viruses within each group show some antigenic cross-reactivity, and there may
be a number of serotypes within one virus species. Animals immune to one serotype are
susceptible to infection with different serotypes of the same coronavirus.
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Properties
of Coronaviruses
- Pleomorphic spherical virion, 75-160 nm (average 100 nm)
in diameter
- Envelope with large, widely spaced, club-shaped peplomers
- Tubular nucleocapsid with helical symmetry, 1020 nm in diameter
- Linear plus sense ssRNA genome, 27-33 kb, capped and
polyadenylated, infectious
- Three or four structural proteins: peplomer glycoprotein S (E2,
18OK220K),
transmembrane glycoprotein M (El, 23K-29K), nucleocapsid phosphoprotein N
(50K-60K); some viruses have peplomers with hernagglutinin plus acetylesterase
activity, HE (E3, 62K-65K)
- Replicates in cytoplasm; full-length minus sense RNA strand is
transcribed from the virion RNA, from which a nested set of mRNAs is produced with unique
sequences at their 5' ends, which are translated; maturation is by budding into
endoplasmic reticulum and Golgi cisternae, with virions released by exocytosis.
Right. Electron photomicrograph of
feline infectious peritonitis virus. The electron-dense RNA core is surrounded by
radiating petal-shaped spikes peplomers, which give the virus its typical corona
appearance. |
 |
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Viral Replication
The whole of the replication
cycle occurs in the cytoplasm and is relatively slow. Following adsorption, penetration,
and uncoating, the input virion RNA molecule is translated directly, one of the products
being an RNA polymerase which then transcribes a full-length minus sense RNA, from which
is transcribed a 3'-coterminal "nested set" of subgenomic mRNAs. The
nested set comprises five to seven overlapping species of mRNAs which extend for different
lengths from a common 3' terminus. The genomic RNA and all mRNAs have an identical 5'leader sequence of about 72 nucleotides. Accordingly, the
nested set of mRNAs is formed by the unusual mechanism of joining two noncontiguous RNAs.
The joining of the 5' leader sequence to the remaining part of each mRNA occurs during
transcription. Probably multiple copies of the 5' leader RNA are synthesized
independently, following which they bind to complementary intragenic initiation sites on
the (-) strand RNA where they are linked to form each member of the nested set. Only the
unique sequence toward the 5' end, which is not shared with the next smallest mRNA in the
nested set, is translated, each product therefore being a unique protein.
The translation of the
structural proteins M, S, and N is associated with maturation of virions by budding into
vesicles formed from the rough endoplasmic reticulum and Golgi apparatus. The S protein,
which is glycosylated cotranslationally, and the M protein, which is glycosylated in the
Golgi apparatus, become inserted in the vesicle membrane and serve as sites for
association with nucleocapsid. Virions are released by exocytosis when the virion-filled
vesicles fuse with the plasma membrane.
Coronavirus
transcription and translation.
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After release of the (+) strand
genomic RNA in the cytoplasm, an RNA-dependent RNA polymerase is synthesized, which
transcribes a full-length (-) strand RNA, from which are synthesized (a) new genomic RNA,
(b) an overlapping series of subgenomic mRNAs, and (c) leader RNA. The genomic RNA and
mRNAs are capped and polyadenylated (zigzag line) and form a "nested set" with
common 3' ends and a common leader sequence on the 5' end. Only the unique sequence of the
mRNAs toward the 5' end is translated, to produce several nonstructural proteins (NS) and
four structural proteins: M (EI), transmembrane glycoprotein; S (E2), peplomer
glycoprotein; N, nucleoprotein; and in some coronaviruses HE (E3), hemagglutinin-esterase
glycoprotein. Maturation and assembly occur in the rough endoplasmic reticulum and the
Golgi, and virions are released by exocytosis. [Modified
from K. V. Holmes, In "Fields Virology" (B. N. Fields et al., eds.), 2nd Ed., p.
847. Raven, New York, 1990.1
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Diseases
Caused by Coronaviruses
Feline Infectious Peritonitis
Feline infectious peritonitis is
an important disease that occurs in cats of all ages and in all parts of the world.
Serologic surveys have established that the virus is widely distributed in wild and
domestic cats. For example, in catteries it is not unusual to find over 90% of cats with
antibody to the virus. However, the incidence of clinical disease is much lower (<10%),
indicating that subclinical infections are common.
Feline infectious peritonitis
often occurs in association with other diseases, particularly those likely to cause
immunosuppression, such as feline leukemia, feline immunodeficiency, feline panleukopenia,
and feline syncytial virus infections. A second feline coronavirus that causes diarrhea
may be a variant of infectious peritonitis virus with a tropism for the epithelial cells
of the intestine.
Clinical Features. The clinical onset of feline
infectious peritonitis is insidious; the cat loses its appetite, is depressed, and may
have a fever. Progressive debility follows, and in the classic ("wet") form of
the disease, abdominal distention is seen as a result of the peritonitis, although only a
proportion of clinically diseased cats develop peritonitis. Pleuritis causing dyspnea is
observed in some cats, and there are reports of neurologic and ocular disease, occurring
in others. Affected cats die within 1 to 8 weeks. Peritoneal fluid from cats with
peritonitis clots, contains high concentrations of protein, and is often flecked with
fibrin.
Pathogenesis and
Pathology. FIP
is caused by a rare mutant form of a ubiquitous feline enteric coronavirus. The enteric
coronavirus infection ivolves virtually all cats, and especially cats from shelters and
purebred catteries. The mutation, when it occurs, is usually during the initial enteric
coronvirus infection. and the disease incubates for days, months and even years before
becoming clinical. Cats with FIP usually do not shed FIP virus, because the mutant virus
is present only in the lesions within the body. The only virus that most of them shed is
the parent enteric coronavirus. This means no two cases of FIP are caused by the same virus, and that horizontal
transmission, i.e., cat-to-cat transfer is rather the exception than the rule. Because the mutation to FIP virus is uncommon, other cats exposed to a cat
with FIP have the same low risk of developing FIP as any cat infected with enteric
coronavirus.
Diagnosis. Clinical diagnosis of the
classic ("wet") form of feline infectious peritonitis is not difficult. When
doubt exists, virus isolation from peritoneal exudates, blood, and homogenates of
abdominal and thoracic organs can be attempted in feline embryonic lung cultures. Antibody
can be detected in sera by several techniques, but in view of the frequency of inapparent
infections with infectious peritonitis virus, interpretation of such data is difficult. A
polyclonal hypergammaglobulinemia in the presence of appropriate clinical signs can aid
diagnosis.
Epidemiology and Control. Under natural conditions,
feline infectious peritonitis virus probably spreads by aerosol from clinically diseased
cats. The roles of fecal excretion of the virus and subclinically infected cats in the
epidemiology of the disease have not been critically examined. The fact that some cats
with actively or passively acquired antibody develop a more rapidly progressive form of
the disease than seronegative cats inoculated with the same dose of virus represents a
major hurdle to the development of effective vaccines. Control of feline infectious
peritonitis depends on segregation of infected cats. Any cat with antibody to the virus
must be regarded as persistently infected.
Taxonomy
Virus Code. 19. Virus Accession number 19000000.
Virus infects vertebrates.
Description is on taxonomic level of family. Virus belongs to the order Nidovirales (VC
VO03. ).
Properties of Virion
Morphology
Virions enveloped; slightly pleomorphic; spherical, or kidney-shaped, or rod-shaped;
120-160 nm in diameter, or
120-140 nm in diameter. Surface projections of envelope distinct; club-shaped; spaced
widely apart and
dispersed evenly over all the surface. Nucleocapsids rod-shaped (straight or bend); 9 nm
in diameter, or 11-13
nm in diameter. Symmetry helical (or tubular).
Virology
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